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BiTransDPI
提交 98bd5425 作者: 朱学凯
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predict/lr-1e-5-batch-32-e-10-layer6-0428-step-74133/test.txt
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train-z-10.txt
usage: run_interaction.py [-h] [-b N] [-j N] [--epochs N] [--task TASK] [--lr LR] [--config CONFIG] [--savedir SAVEDIR] [--init INIT] [--output OUTPUT] ------------------creat model---------------------------
[--do_eval DO_EVAL] model name : BertAffinity
run_interaction.py: error: argument --task: invalid choice: 'train_z_10' (choose from 'train', 'test', 'channel', 'ER', 'GPCR', 'kinase') task name : train_z_10
epoch num : 10
step num : 82370
batch size : 32
learning rate : 1e-05
begin training
Training at Epoch 1 step 1 with loss 92.4951105210186
Training at Epoch 1 step 2 with loss 93.17756240809318
Training at Epoch 1 step 3 with loss 114.49414239810645
Training at Epoch 1 step 4 with loss 122.08383729437215
Training at Epoch 1 step 5 with loss 129.99561872416058
Training at Epoch 1 step 6 with loss 73.53177488781719
Training at Epoch 1 step 7 with loss 67.67550751518681
Training at Epoch 1 step 8 with loss 89.81244679176226
Training at Epoch 1 step 9 with loss 95.50620040785019
Training at Epoch 1 step 10 with loss 72.08303835045118
Training at Epoch 1 step 11 with loss 82.76418143457494
Training at Epoch 1 step 12 with loss 108.89459573966495
Training at Epoch 1 step 13 with loss 111.4655858001799
Training at Epoch 1 step 14 with loss 84.78694550013189
Training at Epoch 1 step 15 with loss 114.83031409168869
Training at Epoch 1 step 16 with loss 127.97015270740204
Training at Epoch 1 step 17 with loss 71.08598417893626
Training at Epoch 1 step 18 with loss 80.35302388638088
Training at Epoch 1 step 19 with loss 65.19637177143075
Training at Epoch 1 step 20 with loss 105.91055051932058
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Training at Epoch 1 step 30 with loss 91.50457358855031
Training at Epoch 1 step 31 with loss 99.12687103483839
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Training at Epoch 1 step 67 with loss 92.89817984691204
Training at Epoch 1 step 68 with loss 66.79750429994621
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Training at Epoch 1 step 83 with loss 92.75958313998785
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Training at Epoch 1 step 90 with loss 94.73628873460433
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Training at Epoch 1 step 95 with loss 73.9991576242904
Training at Epoch 1 step 96 with loss 96.71050757563071
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Training at Epoch 1 step 101 with loss 122.91427102847196
Training at Epoch 1 step 102 with loss 84.79242947124084
Training at Epoch 1 step 103 with loss 69.27218590308526
Training at Epoch 1 step 104 with loss 137.35366412602056
Training at Epoch 1 step 105 with loss 103.69351650897687
Training at Epoch 1 step 106 with loss 79.71006056385382
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Training at Epoch 1 step 108 with loss 96.77648825647236
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Training at Epoch 1 step 114 with loss 76.35320740560718
Training at Epoch 1 step 115 with loss 83.85028062460822
Training at Epoch 1 step 116 with loss 80.78794355220077
Training at Epoch 1 step 117 with loss 102.93103930973358
Training at Epoch 1 step 118 with loss 68.30335427959278
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Training at Epoch 1 step 120 with loss 142.43652109713082
Training at Epoch 1 step 121 with loss 81.72004639641608
Training at Epoch 1 step 122 with loss 78.76687930707678
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Training at Epoch 1 step 124 with loss 94.58747202596027
Training at Epoch 1 step 125 with loss 89.07941321464504
Training at Epoch 1 step 126 with loss 56.71663924802841
Training at Epoch 1 step 127 with loss 111.71821470567775
Training at Epoch 1 step 128 with loss 110.45860691688773
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Training at Epoch 1 step 133 with loss 152.75232966151867
Training at Epoch 1 step 134 with loss 117.03479859667053
Training at Epoch 1 step 135 with loss 116.34972659498567
Training at Epoch 1 step 136 with loss 128.65888029874702
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Training at Epoch 1 step 140 with loss 85.79476026057232
Training at Epoch 1 step 141 with loss 96.46672883410581
Training at Epoch 1 step 142 with loss 106.86365204033125
\ No newline at end of file
train-z-100.txt 0 → 100644
------------------creat model---------------------------
model name : BertAffinity
task name : train_z_100
epoch num : 10
step num : 82370
batch size : 32
learning rate : 1e-05
begin training
Training at Epoch 1 step 1 with loss 9451.562846405579
Training at Epoch 1 step 2 with loss 10539.148544942811
Training at Epoch 1 step 3 with loss 13214.238299809123
Training at Epoch 1 step 4 with loss 11974.131705434555
Training at Epoch 1 step 5 with loss 13056.834344326726
Training at Epoch 1 step 6 with loss 10778.038355990604
Training at Epoch 1 step 7 with loss 6402.170340647383
Training at Epoch 1 step 8 with loss 7505.653825822036
Training at Epoch 1 step 9 with loss 11491.058570256906
Training at Epoch 1 step 10 with loss 7544.377872630435
Training at Epoch 1 step 11 with loss 9568.073402454625
Training at Epoch 1 step 12 with loss 9998.767080945678
Training at Epoch 1 step 13 with loss 10186.155151348252
Training at Epoch 1 step 14 with loss 13439.330408809925
Training at Epoch 1 step 15 with loss 9051.544244282575
Training at Epoch 1 step 16 with loss 9461.647221322954
Training at Epoch 1 step 17 with loss 11870.539263857658
Training at Epoch 1 step 18 with loss 9997.821463191081
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Training at Epoch 1 step 20 with loss 6855.866472321384
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Training at Epoch 1 step 55 with loss 6720.282688725978
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Training at Epoch 1 step 58 with loss 13741.30451688642
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Training at Epoch 1 step 60 with loss 5912.374268591062
Training at Epoch 1 step 61 with loss 8594.593065490011
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Training at Epoch 1 step 67 with loss 7069.009052055015
Training at Epoch 1 step 68 with loss 13082.951405633527
Training at Epoch 1 step 69 with loss 7027.65318884754
Training at Epoch 1 step 70 with loss 9212.968956252542
Training at Epoch 1 step 71 with loss 16255.306725812292
Training at Epoch 1 step 72 with loss 9927.49388916042
Training at Epoch 1 step 73 with loss 9363.729493310933
Training at Epoch 1 step 74 with loss 8915.269599849882
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Training at Epoch 1 step 95 with loss 9759.692089144737
Training at Epoch 1 step 96 with loss 9312.90779926047
Training at Epoch 1 step 97 with loss 9932.462518380407
Training at Epoch 1 step 98 with loss 16279.811956755615
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Training at Epoch 1 step 100 with loss 9550.029210839733
Training at Epoch 1 step 101 with loss 11009.906859058976
Training at Epoch 1 step 102 with loss 8595.688154017711
Training at Epoch 1 step 103 with loss 11494.721449584906
Training at Epoch 1 step 104 with loss 9781.04789092648
Training at Epoch 1 step 105 with loss 9663.411693108876
Training at Epoch 1 step 106 with loss 8815.145763942593
Training at Epoch 1 step 107 with loss 9274.673286021458
Training at Epoch 1 step 108 with loss 9851.448310578064
Training at Epoch 1 step 109 with loss 10905.806021890856
Training at Epoch 1 step 110 with loss 11737.867576321729
Training at Epoch 1 step 111 with loss 11984.93661714363
Training at Epoch 1 step 112 with loss 10884.17599582384
Training at Epoch 1 step 113 with loss 7916.0802447459955
Training at Epoch 1 step 114 with loss 11872.357444049096
Training at Epoch 1 step 115 with loss 11962.673866451234
Training at Epoch 1 step 116 with loss 6845.997200293197
Training at Epoch 1 step 117 with loss 11659.715399764005
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Training at Epoch 1 step 120 with loss 13356.000510888443
Training at Epoch 1 step 121 with loss 8975.701195816706
Training at Epoch 1 step 122 with loss 10831.575369499047
Training at Epoch 1 step 123 with loss 8981.59028977735
Training at Epoch 1 step 124 with loss 11873.908523875401
Training at Epoch 1 step 125 with loss 9969.421376240314
Training at Epoch 1 step 126 with loss 8528.319978740034
Training at Epoch 1 step 127 with loss 10115.97217964517
Training at Epoch 1 step 128 with loss 8766.398194623189
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Training at Epoch 1 step 131 with loss 8956.305291010496
Training at Epoch 1 step 132 with loss 9437.837683083439
Training at Epoch 1 step 133 with loss 12291.737625596827
Training at Epoch 1 step 134 with loss 7264.059306350093
Training at Epoch 1 step 135 with loss 9423.442854884503
Training at Epoch 1 step 136 with loss 8458.399109400325
Training at Epoch 1 step 137 with loss 7906.908383251403
Training at Epoch 1 step 138 with loss 10677.089989457188
Training at Epoch 1 step 139 with loss 5274.1119982033515
Training at Epoch 1 step 140 with loss 8442.564112059925
Training at Epoch 1 step 141 with loss 11943.051770715618
Training at Epoch 1 step 142 with loss 8063.379469458803
\ No newline at end of file
train.sh
CUDA_VISIBLE_DEVICES=0 python run_interaction.py --b=32 --task=train_z_10 --epochs=10 --lr=1e-5 --savedir=lr-1e-5-batch-32-e-10-layer3-0429-z-10 --config=./config/config_layer_3.json CUDA_VISIBLE_DEVICES=0 python run_interaction.py --b=32 --task=train_z_100 --epochs=10 --lr=1e-5 --savedir=lr-1e-5-batch-32-e-10-layer3-0429-z-100 --config=./config/config_layer_3.json
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