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BiTransDPI
提交 2b22a0b1 作者: 朱学凯
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add z-score module

上级 009437e6
正在显示 包含 19 行增加 和 16 行删除
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.idea/CPI.iml
...@@ -2,7 +2,7 @@ ...@@ -2,7 +2,7 @@
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......
.idea/misc.xml
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\ No newline at end of file
.idea/shelf/Uncommitted_changes_before_Update_at_2021_4_29__1_41___Default_Changelist_.xml 0 → 100644
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\ No newline at end of file
.idea/workspace.xml
...@@ -4,9 +4,8 @@ ...@@ -4,9 +4,8 @@
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...@@ -229,19 +228,14 @@ ...@@ -229,19 +228,14 @@
<line>36</line> <line>36</line>
<option name="timeStamp" value="21" /> <option name="timeStamp" value="21" />
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<url>file://$PROJECT_DIR$/utils/normalize_data.py</url>
<line>10</line>
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<SUITE FILE_PATH="coverage/CPI$dataset.coverage" NAME="dataset Coverage Results" MODIFIED="1618641059668" SOURCE_PROVIDER="com.intellij.coverage.DefaultCoverageFileProvider" RUNNER="coverage.py" COVERAGE_BY_TEST_ENABLED="true" COVERAGE_TRACING_ENABLED="false" WORKING_DIRECTORY="$PROJECT_DIR$" /> <SUITE FILE_PATH="coverage/CPI$run_interaction.coverage" NAME="run_interaction Coverage Results" MODIFIED="1619081693342" SOURCE_PROVIDER="com.intellij.coverage.DefaultCoverageFileProvider" RUNNER="coverage.py" COVERAGE_BY_TEST_ENABLED="true" COVERAGE_TRACING_ENABLED="false" WORKING_DIRECTORY="$PROJECT_DIR$" />
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</project> </project>
\ No newline at end of file
data/test_z_ic50 0 → 100644
This source diff could not be displayed because it is too large. You can view the blob instead.
utils/normalize_data.py
import numpy as np import numpy as np
def z_score(data, save): def z_score(data, save, enlarge):
with open(data, 'r') as f: with open(data, 'r') as f:
lines = f.readlines() lines = f.readlines()
data = [] data = []
for line in lines: for line in lines:
aff = np.float64(line.strip()) aff = np.float64(line.strip())
data.append(aff) data.append(aff)
data = np.array(lines) data = np.array(data)
ave = np.mean(data) ave = np.mean(data)
std = np.std(data) std = np.std(data)
new_affinity = (data - ave) / std new_affinity = (data - ave) / std
new_affinity *= enlarge
new_affinity = list(new_affinity) new_affinity = list(new_affinity)
with open(save, 'w') as f: with open(save, 'w') as f:
for aff in new_affinity: for aff in new_affinity:
...@@ -23,4 +24,5 @@ def z_score(data, save): ...@@ -23,4 +24,5 @@ def z_score(data, save):
if __name__ == '__main__': if __name__ == '__main__':
data = '../data/test_ic50' data = '../data/test_ic50'
save = '../data/test_z_ic50' save = '../data/test_z_ic50'
z_score(data, save) enlarge = 100
\ No newline at end of file z_score(data, save, enlarge)
\ No newline at end of file
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