add z-score module

.idea/CPI.iml

@@ -2,7 +2,7 @@
 <module type="PYTHON_MODULE" version="4">
   <component name="NewModuleRootManager">
     <content url="file://$MODULE_DIR$" />
-    <orderEntry type="jdk" jdkName="Python 3.6 (py3.6)" jdkType="Python SDK" />
+    <orderEntry type="jdk" jdkName="Python 3.6 (code)" jdkType="Python SDK" />
     <orderEntry type="sourceFolder" forTests="false" />
   </component>
   <component name="PyDocumentationSettings">

.idea/misc.xml

 <?xml version="1.0" encoding="UTF-8"?>
 <project version="4">
-  <component name="ProjectRootManager" version="2" project-jdk-name="Python 3.6 (py3.6)" project-jdk-type="Python SDK" />
+  <component name="ProjectRootManager" version="2" project-jdk-name="Python 3.6 (code)" project-jdk-type="Python SDK" />
 </project>
\ No newline at end of file

.idea/shelf/Uncommitted_changes_before_Update_at_2021_4_29__1_41___Default_Changelist_.xml

+<changelist name="Uncommitted_changes_before_Update_at_2021_4_29,_1_41_下午_[Default_Changelist]" date="1619674906341" recycled="true" deleted="true">
+  <option name="PATH" value="$PROJECT_DIR$/.idea/shelf/Uncommitted_changes_before_Update_at_2021_4_29,_1_41_下午_[Default_Changelist]/shelved.patch" />
+  <option name="DESCRIPTION" value="Uncommitted changes before Update at 2021/4/29, 1:41 下午 [Default Changelist]" />
+</changelist>
\ No newline at end of file

.idea/workspace.xml

@@ -4,9 +4,8 @@
     <list default="true" id="f877ac68-9cea-46d8-9125-207eebe5b5d6" name="Default Changelist" comment="">
       <change beforePath="$PROJECT_DIR$/.idea/CPI.iml" beforeDir="false" afterPath="$PROJECT_DIR$/.idea/CPI.iml" afterDir="false" />
       <change beforePath="$PROJECT_DIR$/.idea/misc.xml" beforeDir="false" afterPath="$PROJECT_DIR$/.idea/misc.xml" afterDir="false" />
-      <change beforePath="$PROJECT_DIR$/.idea/shelf/Uncommitted_changes_before_Update_at_2021_4_16,_11_22_上午_[Default_Changelist]/shelved.patch" beforeDir="false" />
-      <change beforePath="$PROJECT_DIR$/.idea/shelf/Uncommitted_changes_before_Update_at_2021_4_16__11_22___Default_Changelist_.xml" beforeDir="false" />
       <change beforePath="$PROJECT_DIR$/.idea/workspace.xml" beforeDir="false" afterPath="$PROJECT_DIR$/.idea/workspace.xml" afterDir="false" />
+      <change beforePath="$PROJECT_DIR$/utils/normalize_data.py" beforeDir="false" afterPath="$PROJECT_DIR$/utils/normalize_data.py" afterDir="false" />
     </list>
     <option name="SHOW_DIALOG" value="false" />
     <option name="HIGHLIGHT_CONFLICTS" value="true" />
@@ -229,19 +228,14 @@
           <line>36</line>
           <option name="timeStamp" value="21" />
         </line-breakpoint>
-        <line-breakpoint enabled="true" suspend="THREAD" type="python-line">
-          <url>file://$PROJECT_DIR$/utils/normalize_data.py</url>
-          <line>10</line>
-          <option name="timeStamp" value="22" />
-        </line-breakpoint>
       </breakpoints>
     </breakpoint-manager>
   </component>
   <component name="com.intellij.coverage.CoverageDataManagerImpl">
+    <SUITE FILE_PATH="coverage/CPI$dataset.coverage" NAME="dataset Coverage Results" MODIFIED="1618641059668" SOURCE_PROVIDER="com.intellij.coverage.DefaultCoverageFileProvider" RUNNER="coverage.py" COVERAGE_BY_TEST_ENABLED="true" COVERAGE_TRACING_ENABLED="false" WORKING_DIRECTORY="$PROJECT_DIR$" />
     <SUITE FILE_PATH="coverage/CPI$test.coverage" NAME="test Coverage Results" MODIFIED="1618643206375" SOURCE_PROVIDER="com.intellij.coverage.DefaultCoverageFileProvider" RUNNER="coverage.py" COVERAGE_BY_TEST_ENABLED="true" COVERAGE_TRACING_ENABLED="false" WORKING_DIRECTORY="$PROJECT_DIR$" />
-    <SUITE FILE_PATH="coverage/CPI$normalize_data.coverage" NAME="normalize_data Coverage Results" MODIFIED="1619667621484" SOURCE_PROVIDER="com.intellij.coverage.DefaultCoverageFileProvider" RUNNER="coverage.py" COVERAGE_BY_TEST_ENABLED="true" COVERAGE_TRACING_ENABLED="false" WORKING_DIRECTORY="$PROJECT_DIR$/utils" />
-    <SUITE FILE_PATH="coverage/CPI$run_interaction.coverage" NAME="run_interaction Coverage Results" MODIFIED="1618917155441" SOURCE_PROVIDER="com.intellij.coverage.DefaultCoverageFileProvider" RUNNER="coverage.py" COVERAGE_BY_TEST_ENABLED="true" COVERAGE_TRACING_ENABLED="false" WORKING_DIRECTORY="$PROJECT_DIR$" />
+    <SUITE FILE_PATH="coverage/CPI$normalize_data.coverage" NAME="normalize_data Coverage Results" MODIFIED="1619675786375" SOURCE_PROVIDER="com.intellij.coverage.DefaultCoverageFileProvider" RUNNER="coverage.py" COVERAGE_BY_TEST_ENABLED="true" COVERAGE_TRACING_ENABLED="false" WORKING_DIRECTORY="$PROJECT_DIR$/utils" />
     <SUITE FILE_PATH="coverage/CPI$eval.coverage" NAME="eval Coverage Results" MODIFIED="1618396849549" SOURCE_PROVIDER="com.intellij.coverage.DefaultCoverageFileProvider" RUNNER="coverage.py" COVERAGE_BY_TEST_ENABLED="true" COVERAGE_TRACING_ENABLED="false" WORKING_DIRECTORY="$PROJECT_DIR$" />
-    <SUITE FILE_PATH="coverage/CPI$dataset.coverage" NAME="dataset Coverage Results" MODIFIED="1618641059668" SOURCE_PROVIDER="com.intellij.coverage.DefaultCoverageFileProvider" RUNNER="coverage.py" COVERAGE_BY_TEST_ENABLED="true" COVERAGE_TRACING_ENABLED="false" WORKING_DIRECTORY="$PROJECT_DIR$" />
+    <SUITE FILE_PATH="coverage/CPI$run_interaction.coverage" NAME="run_interaction Coverage Results" MODIFIED="1619081693342" SOURCE_PROVIDER="com.intellij.coverage.DefaultCoverageFileProvider" RUNNER="coverage.py" COVERAGE_BY_TEST_ENABLED="true" COVERAGE_TRACING_ENABLED="false" WORKING_DIRECTORY="$PROJECT_DIR$" />
   </component>
 </project>
\ No newline at end of file

utils/normalize_data.py

 import numpy as np
 
-def z_score(data, save):
+def z_score(data, save, enlarge):
     with open(data, 'r') as f:
         lines = f.readlines()
     data = []
     for line in lines:
         aff = np.float64(line.strip())
         data.append(aff)
-    data = np.array(lines)
+    data = np.array(data)
     ave = np.mean(data)
     std = np.std(data)
     new_affinity = (data - ave) / std
+    new_affinity *= enlarge
     new_affinity = list(new_affinity)
     with open(save, 'w') as f:
         for aff in new_affinity:
@@ -23,4 +24,5 @@ def z_score(data, save):
 if __name__ == '__main__':
     data = '../data/test_ic50'
     save = '../data/test_z_ic50'
-    z_score(data, save)
\ No newline at end of file
+    enlarge = 100
+    z_score(data, save, enlarge)
\ No newline at end of file